chore: Update environment configuration and package dependencies for MCP server

- Change MCP_SERVER in .env.example to use port 7123
- Add USE_STDIO_TRANSPORT flag in .env.example for stdio transport mode
- Update bun.lock to include new dependencies: cors, express, ajv, and their type definitions
- Add new scripts for building and running the MCP server with stdio transport
- Introduce PUBLISHING.md for npm publishing guidelines
- Enhance README with detailed setup instructions and tool descriptions

bin/mcp-stdio.cjs

@@ -0,0 +1,84 @@
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+const dotenv = require('dotenv');
+
+/**
+ * MCP Server - Stdio Transport Mode (CommonJS)
+ * 
+ * This is the CommonJS entry point for running the MCP server via NPX in stdio mode.
+ * It will directly load the stdio-server.js file which is optimized for the CLI usage.
+ */
+
+// Set environment variable for stdio transport
+process.env.USE_STDIO_TRANSPORT = 'true';
+
+// Load environment variables from .env file (if exists)
+try {
+    const envPath = path.resolve(process.cwd(), '.env');
+    if (fs.existsSync(envPath)) {
+        dotenv.config({ path: envPath });
+    } else {
+        // Load .env.example if it exists
+        const examplePath = path.resolve(process.cwd(), '.env.example');
+        if (fs.existsSync(examplePath)) {
+            dotenv.config({ path: examplePath });
+        }
+    }
+} catch (error) {
+    // Silent error handling
+}
+
+// Ensure logs directory exists
+try {
+    const logsDir = path.join(process.cwd(), 'logs');
+    if (!fs.existsSync(logsDir)) {
+        fs.mkdirSync(logsDir, { recursive: true });
+    }
+} catch (error) {
+    // Silent error handling
+}
+
+// Try to load the server
+try {
+    // Check for simplified stdio server build first (preferred for CLI usage)
+    const stdioServerPath = path.resolve(__dirname, '../dist/stdio-server.js');
+
+    if (fs.existsSync(stdioServerPath)) {
+        // If we're running in Node.js (not Bun), we need to handle ESM imports differently
+        if (typeof Bun === 'undefined') {
+            // Use dynamic import for ESM modules in CommonJS
+            import(stdioServerPath).catch((err) => {
+                console.error('Failed to import stdio server:', err.message);
+                process.exit(1);
+            });
+        } else {
+            // In Bun, we can directly require the module
+            require(stdioServerPath);
+        }
+    } else {
+        // Fall back to full server if available
+        const fullServerPath = path.resolve(__dirname, '../dist/index.js');
+
+        if (fs.existsSync(fullServerPath)) {
+            console.warn('Warning: stdio-server.js not found, falling back to index.js');
+            console.warn('For optimal CLI performance, build with "npm run build:stdio"');
+
+            if (typeof Bun === 'undefined') {
+                import(fullServerPath).catch((err) => {
+                    console.error('Failed to import server:', err.message);
+                    process.exit(1);
+                });
+            } else {
+                require(fullServerPath);
+            }
+        } else {
+            console.error('Error: No server implementation found. Please build the project first.');
+            process.exit(1);
+        }
+    }
+} catch (error) {
+    console.error('Error starting server:', error.message);
+    process.exit(1);
+}