chore: Update environment configuration and package dependencies for MCP server

- Change MCP_SERVER in .env.example to use port 7123
- Add USE_STDIO_TRANSPORT flag in .env.example for stdio transport mode
- Update bun.lock to include new dependencies: cors, express, ajv, and their type definitions
- Add new scripts for building and running the MCP server with stdio transport
- Introduce PUBLISHING.md for npm publishing guidelines
- Enhance README with detailed setup instructions and tool descriptions

bin/mcp-stdio.js

@@ -0,0 +1,41 @@
+#!/usr/bin/env node
+
+/**
+ * MCP Server - Stdio Transport Mode
+ * 
+ * This is the entry point for running the MCP server via NPX in stdio mode.
+ * It automatically configures the server to use JSON-RPC 2.0 over stdin/stdout.
+ */
+
+// Set environment variables for stdio transport
+process.env.USE_STDIO_TRANSPORT = 'true';
+
+// Import and run the MCP server from the compiled output
+try {
+    // First make sure required directories exist
+    const fs = require('fs');
+    const path = require('path');
+
+    // Ensure logs directory exists
+    const logsDir = path.join(process.cwd(), 'logs');
+    if (!fs.existsSync(logsDir)) {
+        console.error('Creating logs directory...');
+        fs.mkdirSync(logsDir, { recursive: true });
+    }
+
+    // Get the entry module path
+    const entryPath = require.resolve('../dist/index.js');
+
+    // Print initial message to stderr
+    console.error('Starting MCP server in stdio transport mode...');
+    console.error('Logs will be written to the logs/ directory');
+    console.error('Communication will use JSON-RPC 2.0 format via stdin/stdout');
+
+    // Run the server
+    require(entryPath);
+} catch (error) {
+    console.error('Failed to start MCP server:', error.message);
+    console.error('If this is your first run, you may need to build the project first:');
+    console.error('  npm run build');
+    process.exit(1);
+}