chore: Update environment configuration and package dependencies for MCP server

- Change MCP_SERVER in .env.example to use port 7123
- Add USE_STDIO_TRANSPORT flag in .env.example for stdio transport mode
- Update bun.lock to include new dependencies: cors, express, ajv, and their type definitions
- Add new scripts for building and running the MCP server with stdio transport
- Introduce PUBLISHING.md for npm publishing guidelines
- Enhance README with detailed setup instructions and tool descriptions

stdio-start.sh

@@ -0,0 +1,97 @@
+#!/bin/bash
+
+# MCP Server Stdio Transport Launcher
+# This script builds and runs the MCP server using stdin/stdout JSON-RPC 2.0 transport
+
+# ANSI colors for prettier output
+RED='\033[0;31m'
+GREEN='\033[0;32m'
+YELLOW='\033[0;33m'
+BLUE='\033[0;34m'
+NC='\033[0m' # No Color
+
+# Show usage information
+function show_usage {
+  echo -e "${BLUE}Usage:${NC} $0 [options]"
+  echo 
+  echo "Options:"
+  echo "  --debug        Enable debug mode"
+  echo "  --rebuild      Force rebuild even if dist exists"
+  echo "  --help         Show this help message"
+  echo
+  echo "Examples:"
+  echo "  $0                 # Normal start"
+  echo "  $0 --debug         # Start with debug logging" 
+  echo "  $0 --rebuild       # Force rebuild"
+  echo
+  echo "This script runs the MCP server with JSON-RPC 2.0 stdio transport."
+  echo "Logs will be written to the logs directory but not to stdout."
+  echo
+}
+
+# Process command line arguments
+REBUILD=false
+DEBUG=false
+
+for arg in "$@"; do
+  case $arg in
+    --help)
+      show_usage
+      exit 0
+      ;;
+    --debug)
+      DEBUG=true
+      shift
+      ;;
+    --rebuild)
+      REBUILD=true
+      shift
+      ;;
+    *)
+      echo -e "${RED}Unknown option:${NC} $arg"
+      show_usage
+      exit 1
+      ;;
+  esac
+done
+
+# Check for errors
+if [ ! -f ".env" ]; then
+  echo -e "${RED}Error:${NC} .env file not found. Please create one from .env.example." >&2
+  exit 1
+fi
+
+# Set environment variables
+export USE_STDIO_TRANSPORT=true
+
+# Set debug mode if requested
+if [ "$DEBUG" = true ]; then
+  export DEBUG=true
+  echo -e "${YELLOW}Debug mode enabled${NC}" >&2
+fi
+
+# Check if we need to build
+if [ ! -d "dist" ] || [ "$REBUILD" = true ]; then
+  echo -e "${BLUE}Building MCP server with stdio transport...${NC}" >&2
+  bun build ./src/index.ts --outdir ./dist --target bun || {
+    echo -e "${RED}Build failed!${NC}" >&2
+    exit 1
+  }
+else
+  echo -e "${GREEN}Using existing build in dist/ directory${NC}" >&2
+  echo -e "${YELLOW}Use --rebuild flag to force a rebuild${NC}" >&2
+fi
+
+# Create logs directory if it doesn't exist
+mkdir -p logs
+
+# Run the application with stdio transport
+echo -e "${GREEN}Starting MCP server with stdio transport...${NC}" >&2
+echo -e "${YELLOW}Note: All logs will be written to logs/ directory${NC}" >&2
+echo -e "${YELLOW}Press Ctrl+C to stop${NC}" >&2
+
+# Execute the server
+exec bun run dist/index.js
+
+# The exec replaces this shell with the server process
+# so any code after this point will not be executed