docs: Restructure documentation and enhance configuration

- Reorganize MkDocs navigation structure with new sections
- Add configuration, security, and development environment documentation
- Remove outdated development and getting started files
- Update requirements and plugin configurations
- Improve overall documentation layout and content

docs/tools/index.md

@@ -0,0 +1,42 @@
+# Tools Overview
+
+The Home Assistant MCP Server provides a variety of tools to help you manage and interact with your home automation system.
+
+## Available Tools
+
+### Device Management
+- [List Devices](device-management/list-devices.md) - View and manage connected devices
+- [Device Control](device-management/control.md) - Control device states and settings
+
+### History & State
+- [History](history-state/history.md) - View and analyze historical data
+- [Scene Management](history-state/scene.md) - Create and manage scenes
+
+### Automation
+- [Automation Management](automation/automation.md) - Create and manage automations
+- [Automation Configuration](automation/automation-config.md) - Configure automation settings
+
+### Add-ons & Packages
+- [Add-on Management](addons-packages/addon.md) - Manage server add-ons
+- [Package Management](addons-packages/package.md) - Handle package installations
+
+### Notifications
+- [Notify](notifications/notify.md) - Send and manage notifications
+
+### Events
+- [Event Subscription](events/subscribe-events.md) - Subscribe to system events
+- [SSE Statistics](events/sse-stats.md) - Monitor Server-Sent Events statistics
+
+## Getting Started
+
+To get started with these tools:
+
+1. Ensure you have the MCP Server properly installed and configured
+2. Check the specific tool documentation for detailed usage instructions
+3. Use the API endpoints or command-line interface as needed
+
+## Next Steps
+
+- Review the [API Documentation](../api/index.md) for programmatic access
+- Check [Configuration](../config/index.md) for tool-specific settings
+- See [Examples](../examples/index.md) for practical use cases